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Genetic Medicines

This month, I have decided to review recent advances in genetic medicine. I thought this would be fun because the last time I spent time studying this was back in the heyday of CRISPR drug companies ~5 years ago. Today, I’m much more interested in the targets and indications genetic medicine can be used for.

The modality is relatively risky and as a result the biology must be clear and straightfoward. Additionally, because of the high upfront costs and complicated trial and regulatory pathway, there is limited competition within each indication/target.

For well understood diseases like Duchenne, its an engineering problem. Efficacy should be proportional to exposure and all the bells and whistles related to sequence engineering, delivery vector design, and chemistry are important. Preclinical in vitro assays can have meaningful readthrough to the drug profile in patients.

Finally, the allure of gene therapy is that you could eventually get a curative therapy. They are science experiments prosecuting human genetics evidence. Sometimes they can make money. But they will always teach something meaningful.

Table of Contents

  1. Companies
  2. Platforms
  3. Indications

Companies

Gene Editing / Genome Engineering

  • Beam Therapeutics
  • Prime Medicine
  • CRISPR Therapeutics
  • Intellia Therapeutics
  • Editas Medicine

Oligonucleotide / RNA Therapeutics

Gene Delivery / Muscle & Cardiac Focus

AAV Gene Therapy

Indications

Protein Misfolding

These essentially all involve knocking down expression of the misfolded protein and/or correction of toxic variants.

Alpha-1 Antitrypsin Deficiency (AATD)

  • Fazirsiran (Takeda / Arrowhead)
  • WVE-006

Transthyretin amyloidosis

  • Patisiran (TTR silencer)
  • Vutrisiran (next generation TTR silencer)
  • Nucresiran (next next generation TTR silencer)
  • Wainua (eplontersen; TTR silencer ASO)

Infectious Diseases

The idea here is to silence expression of the viral genome. Of course this is only feasible if you can deliver the silencing technology to infected cells. However, hepatitis by name, is a liver inflammation and commonly caused by A, B, C, D, and E viruses. Some hepatitis viruses including B have this cccDNA (covalently closed circular) that persist and enable chronic infection. Targeting these transcripts with siRNA has been an effective strategy.

Hepatitis B

  • Xalnesiran: old Dice program, targets conserved regiong of HBV genome
  • JNJ-73763989 siRNA + JNJ-6379 (bersacapavir) CAM

Hepatitis D


Cardiometabolic Diseases

Strategy is to just phenocopy ARBs, PCSK9i, and other genetically validated targets.

Hypertriglyceridemia / Dyslipidemia

  • Plozasiran (ARO-APOC3)
    • Familial chylomicronemia syndrome
    • Severe hypertriglyceridemia
    • Dyslipidemia
  • Olezarsen (ApoC-III; Ionis)
  • Inclisiran (PCSK9; hypercholesterolemia)
  • ALN-APOC3
  • ALN-CIDEB
  • Zodasiran (ARO-ANG3)
    • Dyslipidemia
    • Homozygous familial hypercholesterolemia

Heterozygous Familial Hypercholesterolemia

  • LDLR RNA editing to upregulate LDLR protein (GalNAc-AIMer; Wave Life Sciences)

ASCVD

  • Olpasiran: Lipoprotein(a) Amgen/Arrowhead

Hypertension

Obesity

  • ARO-ALK7
  • INHBE (WVE-007 (GalNAc), ARO-INHBE)

MASH

  • PNPLA3 (WVE-008, ARO-PNPLA3)
  • HSD17B13 (Alnylam / Arrowhead)
  • ALN-2232 (ACVR1C)

Type II Diabetes

  • ALN-4324 (GRB14 siRNA)

Diabetic Kidney Disease

  • ALN-ANG3 siRNA

Muscular Dystrophies

Historically these have been very controversial and high visibility given how devastating these diseases are. Restoring muscle function and development or preventing worsening in young children is difficult but it seems like recently there has been a lot of progress.

Duchenne Muscular Dystrophy (DMD)

  • Sarepta’s Elevidys and exon skipping medicines are approved
  • ENTR-601 series for all exons (PMO platform)
  • Exons 51 (Zeleciment rostudirsen (DYNE-251)) / 53 (WVE-N531) / 45 (AOC 1045) / 44 (Del-Zota)

Limb-Girdle Muscular Dystrophy

  • SRP-9003 (bidridistrogene xeboparvovec)
  • BridgeBio (BBP-418 oral drug)

Myotonic Dystrophy Type 1 (DM1)

  • Zeleciment basivarsen (DYNE-101). Silencing of DMPK
  • VX-670; Vertex/Entrada

Facioscapulohumeral Muscular Dystrophy Type 1 (FSHD1)

  • DUX4 (DYNE-302, ARO-DUX4)

Other Rare Inherited Diseases

Most of these have a very simple science story which is that a gene is mutated and a gene is delivered to correct or knockdown the mutated gene.

Spinocerebellar Ataxia Type 2 (SCA2)

  • ATXN2 (ARO-ATXN2)

Angelman Syndrome

  • ION582 (UBE3A-ATS; UBE3A ASO)
  • Ultragenyx: GTX-102, UBE3A ASO

Stargardt Disease

  • AAVB-039, delivery of full length ABCA4 protein using dual AAV
  • Delivery of functional USH2A
  • ENTR-801

Pompe Disease

  • Delivery of GAA (DYNE-401)

Alexander Disease

  • Zilganersen (GFAP ASO), Ph3 from Ionis

Huntington’s Disease

  • ALN-HTT02 siRNA for HTT
  • uniQure (AAV5 miRNA for HTT directly delivered to striatum and caudate regions)
  • Skyhawk Therapeutics has a small molecule targeting HTT mRNA
  • WVE-003 mHTT allele selective splicing

Urea Cycle Disorders / Hepatic Encephalopathy

  • KRRO-121: glutamate synthase protein stabilization

Rett Syndrome

  • Taysha, MECP2 expression titrated by a miRNA autoregulatory circuit

Cholestatic Disorders

  • AX-0810 ProQR Therapeutics
    • Edits NTCP into LOF variant preventing bile acid reuptake
    • Potential disease-modifying therapy for PSC, biliary atresia

Cardiomyopathies

  • Danon Disease (AAV9 RP-A501; delivery of LAMP2B)
  • PKP2-related ACM (AAVrh74 RP-A601; delivery of PKP2)
  • BAG3-associated DCM (AAVrh74 RP-A701; delivery of BAG3)
  • Friedreich’s ataxia cardiomyopathy (LX2006; delivery of FXN)
  • DSP cardiomyopathy (LX2021; delivery of CX43)
  • TNNI3 mutant cardiomyopathy (LX2022; delivery of TNNI3)
  • PLN cardiomyopathy (AOC 1086, PLN)
  • PRKAG2 Syndrome (AOC 1072, PRKAG2)

Acute Hepatic Porphyria (AHP)

  • Givosiran (GIVLAARI): ALAS1 siRNA

Primary Hyperoxaluria (PH)

  • Lumasiran (OXLUMO): HAO1 siRNA
  • Nedosiran (RIVFLOZA): LDHA siRNA

Hereditary Angioedema (HAE)

  • Donidalorsen (DAWNZERA) – PKK ASO

Prion Disease

  • ION717 (PRNP ASO)

Pelizaeus–Merzbacher Disease

  • ION356 (PLP1 ASO)

MECP2 Duplication Syndrome

  • ION440 (MECP2 ASO)

Canavan Disease

  • BBP-812: AAV9 ASPA replacement therapy

Cerebral Adrenoleukodystrophy (CALD)

  • SKYSONA (elivaldogene autotemcel): ABCD1 modified autologous HSCs

Spinal Muscular Atrophy (SMA)

  • Onasemnogene abeparvovec-brve (ITVISMA): SMN1 gene replacement
  • Zolgensma

Neurological Diseases

There are proteins with known role in major neurological disease. The question has always been whether therapeutic modulation has failed because the degree of modulation was not strong enough or whether these disease associated proteins have already ‘done the damage’ by the time a therapy is received.

Multiple System Atrophy / Parkinson’s Disease

  • ION464 (SNCA)

Alzheimer’s Disease

  • Lexeo has three approaches to both suppress APOE4 and deliver APOE2 and other protective AD variant genes

Frontotemporal Dementia / ALS

  • Passage Bio (PBFT02): AAV1 modified DNA encoding the granulin gene (GRN)

SOD1 ALS

  • Tofersen (QALSODY) – FDA approved SOD1 ASO. Peak sales estimate of $300mn

Hematologic Diseases

Commonly modulation of HSCs given feasibility of stem cell transplant.

HSC Indications

  • β-thalassemia (exa-cel (Casgevy) and beti-cel (Zynteglo))
  • Fanconi anemia (RP-L102; delivery of FANCA)
  • Leukocyte adhesion deficiency (ITGB2 gene; RP-L201)
  • Sickle cell disease (Lovotibeglogene autotemcel)
  • Pyruvate kinase deficiency (RP-L301; delivery of PKLR)

Hemophilia A/B

  • Hemophilia A (Roctavian; Valoctocogene roxaparvovec)
  • Hemophilia B HEMGENIX (etranacogene dezaparvovec)

Published Jan 31, 2026

Harvard-MIT PhD Student